S. A. Farrag
Department of Technology of Production and Processing of Agricultural Products,Faculty of Veterinary Sanitation and Animal Technology,Kazakh National University of Agriculture, Kazakhstan
A. B. Tanatarov
Department of Technology of Production and Processing of Agricultural Products,Faculty of Veterinary Sanitation and Animal Technology,Kazakh National University of Agriculture, Kazakhstan
M. E. Soltan
Department of Poultry Production, Faculty of Agriculture, Menofia University, Egypt
ABSTRACT
Genetic fingerprinting, DNA testing or DNA profiling is a technique to distinguish between individuals of the same species using only samples of their DNA. In modern animal breeding and production, with welfare and optimum nutrition, the major health problems arise mainly from genetic background. Obviously the selection does not affect the genome, but rather changes gene frequencies in the population and modifies the range of genetic variation of selected and correlated traits. These effects can be detected at the DNA level with the use of appropriate tools. DNA fingerprinting is a powerful tool in poultry for investigating genetic diversity within stocks and establishing relationships among stocks, characterizing individuals or populations genotypically, studying the relative contribution of evolutionary forces to genetic differences between populations, for marker assisted selection, to assist in gene introgression, to predict hybrid vigor and provide useful information for the pre-selection of populations to be used in crossbreeding. This review summarizes the use of genetic fingerprinting in poultry research, especially in some genetic resources of economically important species such as chickens, quails, ducks, goose, turkey and other poultry.
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How to cite this article
S. A. Farrag, A. B. Tanatarov and M. E. Soltan, 2010. Using of DNA Fingerprinting in Poultry Research. International Journal of Poultry Science, 9: 406-416.
DOI: 10.3923/ijps.2010.406.416
URL: https://scialert.net/abstract/?doi=ijps.2010.406.416
DOI: 10.3923/ijps.2010.406.416
URL: https://scialert.net/abstract/?doi=ijps.2010.406.416
REFERENCES
- Ajmone-Marsan, P., A. Valentini, M. Cassandro, G. Vecchiotti-Antaldi, G. Bertoni and M. Kuiper, 1997. AFLP markers for DNA fingerprinting in cattle. Anim. Genet., 28: 418-426.
PubMedDirect Link - Ajmone-Marsan, P., R. Negrini, P. Crepaldi, E. Milanesi, C. Gorni, A. Valentini and M. Cicogna, 2001. Assessing genetic diversity in Italian goat populations using AFLP® markers. Anim. Gen., 32: 281-288.
CrossRefDirect Link - Ali, B.A., M.M. Ahmed and O.M. Aly, 2003. Relationship between genetic similarity and some productive traits in local chicken strains. Afr. J. Biotechnol., 2: 46-47.
Direct Link - Atzmon, G., S. Blum, M. Feldman, U. Lavi and J. Hillel, 2007. Detection of agriculturally important QTLs in chickens and analysis of the factors affecting genotyping strategy. Cytogenetic Genome Res., 117: 327-337.
PubMed - Buitkamp, J., H. Ammer and H. Geldermann, 1991. DNA fingerprinting in domestic animals. Electrophoresis, 12: 169-174.
PubMed - Calvo, J.H., P. Zaragoza and R. Osta, 2001. Random amplified polymorphic DNA fingerprints for identification of species in poultry pate. Poult. Sci., 80: 522-524.
Direct Link - Cheng, H.H., I. Levin, R.L. Vallejo, H. Khatib, J.B. Dodgson, L.B. Crittenden and J. Hillel, 1995. Development of a genetic map of the chicken with markers of high utility. Poult. Sci., 74: 1855-1874.
PubMed - Ren, C., M. Lee, B. Yan, K. Ding and B. Cox et al., 2003. A BAC-based physical map of the chicken genome. Genome Res., 13: 2754-2758.
CrossRef - Chisholm, J., A. Sanchez, J. Brown and H. Hird, 2008. The development of species-specific Real-time PCR assays for the detection of pheasant and quail in food. Food Anal. Methods, 1: 190-194.
CrossRef - Crooijmans, R.P., A.F. Groen, A.J. van Kampen, S. van der Beek, J.J. van der Poel and M.A. Groenen, 1996. Microsatellite polymorphism in commercial broiler and layer lines estimated using pooled blood samples. Poult. Sci., 75: 904-909.
PubMed - Darvasi, A., 1998. Experimental strategies for the genetic dissection of complex traits in animal models. Nat. Genet., 18: 19-24.
Direct Link - Dehghanzadeh, H., S.Z. Mirhoseini, M.N. Romanov and A. Ghorbani, 2009. Evaluation of genetic variability and distances among five iranian native chicken populations using RAPD markers. Pak. J. Biol. Sci., 12: 866-871.
CrossRefPubMedDirect Link - Dmitriev, V.B., I.V. Churkina, A.F. Smirnov and E.K. Nikolaeva, 2001. Destabilizing effect of chicken selection for the functional adrenal reserves. Russian J. Genet., 37: 412-417.
CrossRef - Niu, D., Y. Fu, J. Luo, H. Ruan, X.P. Yu, G. Chen and Y.P. Zhang, 2002. The origin and genetic diversity of chinese native chicken breeds. Biochem. Genet., 40: 163-174.
CrossRefPubMedDirect Link - Dunnington, E.A., L.C. Stallard, J. Hillel and P.B. Siegel, 1994. Genetic diversity among commercial chicken populations estimated from DNA fingerprints. Poult. Sci., 73: 1218-1225.
PubMedDirect Link - Dunnington, E.A., L.C. Stallard, P.B. Siegel and J. Hillel, 1993. Evaluating linkage between DNA fingerprint bands and quantitative traits in chickens: Interactions. Poult. Sci., 72: 1000-1004.
PubMed - Dunnington, E.A., O. Gal, P.B. Siegel, A. Haberfeld and A. Cahaner et al., 1991. Deoxyribonucleic acid fingerprint comparisons between selected populations of chickens. Poult. Sci., 70: 463-467.
PubMed - Dunnington, E.A., O. Gal, Y. Plotsky, A. Haberfeld and T. Kirk et al., 1990. DNA fingerprints of chickens selected for high and low body weight for 31 generations. Anim. Genet., 21: 247-257.
PubMedDirect Link - El-Gendy, E.A., M.A. Helal, N.H. Goher and A. Mostageer, 2005. Molecular characterization of genetic biodiversity in ducks, using RAPD-PCR analysis. Arab J. Biotechnol., 8: 253-264.
Direct Link - El-Gendy, E.A., M.K. Nassar, M.S. Salama and A. Mostageer, 2005. Genotype-environment interaction in relation to heat tolerance in chickens. 1. RAPD-PCR analysis for breeds local to warm regions. Arab J. Biotechnol., 9: 1-16.
Direct Link - Feral, J.P., 2002. How useful are the genetic markers in attempts to understand and manage marine biodiversity. J. Exp. Mar. Biol. Ecol., 268: 121-145.
CrossRefDirect Link - Fumiere, O., M. Dubois, D. Gregoire, A. Thewis and G. Berben, 2003. bFumiere, O., M. Dubois, D. Gregoire, A. Thewis and G. Berben, 2003. Identification on commercialized products of AFLP markers able to discriminate slow- from fast-growing chicken strains. J. Agric. Food Chem., 51: 1115-1119.
CrossRef - Gholizadeh, M., G.R. Mianji, A. Ghobadi, H.S. Zadeh and S. Montazami, 2007. Measurement of within and between genetic variability in duck breeds by RAPD markers. Pak. J. Biol. Sci., 10: 982-985.
CrossRefPubMedDirect Link - Gilbert, D.A., C. Packer, A.E. Pusey, J.C. Stephens and S.J. O'brien, 1991. Analytical DNA fingerprinting in lions: parentage, genetic diversity and kinship. J. Heredity, 82: 378-386.
PubMed - Gilbert, D.A., N. Lehman, S.J. O'brien and R.K. Wayne, 1990. Genetic fingerprinting reflects population differentiation in the California Channel Island fox. Nature, 344: 764-767.
CrossRefDirect Link - Grunder, A.A., M.P. Sabour and J.S. Gavora, 1994. Estimates of relatedness and inbreeding in goose strains from DNA fingerprints. Anim. Genet., 25: 81-88.
PubMed - Guobin, C., C. Hong, L. Xiangping, Y. Zhangping and C. Gouhong et al., 2006. Study on genetic coadaptability of wild quail populations in China. Sci. China Series C Life Sci., 49: 172-181.
CrossRefDirect Link - Haberfeld, A., E.A. Dunnington and P.B. Siegel, 1992. Genetic distances estimated from DNA fingerprints in crosses of white Plymouth Rock chickens. Anim. Genet., 23: 167-173.
CrossRefDirect Link - Haberfeld, A., E.A. Dunnington, P.B. Siegel and J. Hillel, 1996. Heterosis and DNA fingerprinting in chickens. Poult. Sci., 75: 951-953.
PubMed - Hanotte, O., M.W. Bruford and T. Burke, 1992. Multilocus DNA fingerprints in gallinaceous birds: General approach and problems. Heredity, 68: 481-494.
Direct Link - Heyen, D.W., J.I. Weller, M. Ron, M. Band and J.E. Beever et al., 1999. A genome Scan for QTL influencing milk production and health traits in dairy cattle. Physiol. Genomics, 1: 165-175.
Direct Link - Hillel, J., M.A.M. Groenen, M. Tixier-Boichard, A.B. Korol and L. David et al., 2003. Biodiversity of 52 chicken populations assessed by microsatellite typing of DNA pools. Genet. Sel. Evol., 35: 533-557.
CrossRefPubMedDirect Link - Hillel, J., T. Schaap, A. Haberfeld, A.J. Jeffreys, Y. Plotzky, A. Cahaner and U. Lav, 1990. DNA Fingerprints Applied to Gene Introgression in Breeding Program. Genetics, 124: 783-789.
Direct Link - Hinckley, J.D., R.L. Park, S. Xiong, W.R. Andersen and D.L. Kooyman, 2005. Identification and development of sex specific DNA markers in the ostrich using polymerase chain reaction. Int. J. Poult. Sci., 4: 663-669.
CrossRefDirect Link - Huang, C.W., Y.S. Cheng, R. Rouvier, K.T. Yang, C.P. Wu, H.L. Huang and M.C. Huang, 2009. Duck (Anas platyrhynchos) linkage mapping by AFLP fingerprinting. Genet. Selection Evol., 41: 28-35.
Direct Link - Huang, Y., Y. Zhao, C.S. Haley, S. Hu, J. Hao, C. Wu and N. Li, 2006. A genetic and cytogenetic map for the duck (Anas platyrhynchos). Genetics, 173: 287-296.
CrossRefDirect Link - Jenneckens, I., A. Muller-Belecke, G. Horstgen-Schwark and J.N. Meyer, 1999. Proof of the successful development of Nile tilapia (Oreochromis niloticus) clones by DNA fingerprinting. Aquaculture, 173: 377-388.
CrossRef - Jin, L. and R. Chakraborty, 1994. Estimation of genetic distance and coefficient of gene diversity from singleprobe multilocus DNA fingerprinting data. Mol. Biol. Evol., 11: 120-127.
Direct Link - Kaiser, M.G., N. Yonash, A. Cahaner and S.J. Lamont, 2000. Microsatellite polymorphism between and within broiler populations. Poult. Sci., 79: 626-628.
PubMedDirect Link - Kaya, M. and M.A. Yildiz, 2008. Genetic diversity among Turkish native chickens, denizli and gerze, estimated by microsatellite markers. Biochem. Genet., 46: 480-491.
CrossRefDirect Link - Kayang, B.B., A. Vignal, M. Inoue-Murayama, M. Miwa, J.L. Monvoisin, S. Ito and F. Minvielle, 2004. A first-generation microsatellite linkage map of the Japanese quail. Anim. Genet., 35: 195-200.
CrossRefPubMedDirect Link - Kayang, B.B., M. Inoue-Murayama, T. Hoshi, K. Matsuo and H. Takahashi et al., 2002. Microsatellite loci in Japanese quail and cross-species amplification in chicken and guinea fowl. Genet. Sel. Evol., 34: 233-253.
CrossRefPubMedDirect Link - Khatib, H., A. Darvasi, Y. Plotski and M. Soller, 1994. Determining relative microsatellite allele frequencies in pooled DNA samples. PCR Methods Appl., 4: 13-18.
PubMedDirect Link - Kuhnlein, U., Y. Dawe, D. Zadworny and J.S. Gavora, 1989. DNA fingerprinting: A tool for determining genetic distances between strains of poultry. Theor. Applied Genet., 77: 669-672.
CrossRef - Kumar, S.L., 1999. DNA markers in plant improvement: An overview. Biotechnol. Adv., 17: 143-182.
CrossRef - Lee, J.C. and J.G. Chang, 1994. Random amplified polymorphic DNA polymerase chain reaction (RAPD/PCR) fingerprints in forensic species identification. Forensic Sci. Int., 67: 103-107.
PubMed - Levin, I., L.B. Crittenden and J.B. Dodgson, 1994. Mapping DNA polymorphism using PCR primers derived from the sequence of an avian CR1 element. J. Hered., 85: 73-78.
PubMed - Maak, S., K. Wimmers, S. Weigend and K. Neumann, 2003. Isolation and characterization of 18 microsatellites in the Peking duck (Anas platyrhynchos) and their application in other waterfowl species. Mol. Ecol. Notes, 3: 224-227.
CrossRef - Maciuszonek, A., B. Grajewski and M. Bednarczyk, 2005. RAPD-PCR analysis of various goose populations. Folia Biologica, 53: 83-85.
PubMed - Supamit, M., A. Leotaragul, A. Wongsa and P. Krutmuang, 2005. Molecular marker-based genetic diversity assessment of Thai native chicken and broiler chicken. Proceedings of the Conference on International Agricultural Research for Development, October 11-13, Tropentag, Stuttgart, Hohenheim, pp: 1-4.
Direct Link - Naoyuki, Y. and T. Tomita, 1993. Detection of γ-Ray irradiated donor sperm DNA in the transgenic chicken embryo by DNA fingerprint analysis. Jap. Poult. Sci., 30: 114-122.
Direct Link - Pang, S.W.Y., C. Ritland, J.E. Carlson and K.M. Cheng, 1999. Japanese quail microsatellite loci amplified with chicken-specific primers. Anim. Genet., 30: 195-199.
Direct Link - Plotsky, Y., A. Cahaner, A. Haberfeld, U. Lavi, S.J. Lamont and J. Hillel, 1993. DNA fingerprinting bands applied to linkage analysis with quantitative trait loci in chickens. Anim. Genet., 24: 105-110.
PubMed - Plotsky, Y., M.G. Kaiser and S.J. Lamont, 1995. Genetic characterization of highly inbred chickens line by two DNA methods: DNA fingerprinting and polymerase chain reaction using arbitrary primers. Anim. Genet., 26: 163-170.
Direct Link - Ponsuksili, S., K. Wimmers and P. Horst, 1998. Evaluation of genetic variation within and between different chicken lines by DNA fingerprinting. J. Heredity, 89: 17-23.
PubMed - Ponsuksill, S., K. Wimmers, F. Schmoll, P. Horst and K. Schellander, 1999. Comparison of multilocus DNA fingerprints and microsatellites in an estimate of genetic distance in chicken. J. Hered., 90: 656-659.
CrossRefPubMedDirect Link - Rastogi, G., S.D. Mahesh, S. Walujkar, A. Kumar, M.S. Patole and Y.S. Shouche, 2007. Species identification and authentication of tissues of animal origin using mitochondrial and nuclear markers. Meat Sci., 76: 666-674.
CrossRefDirect Link - Riquet, J., W. Coppieters and N. Cambisano, 1999. Fine mapping of quantitative trait loci by identity by descent in outbred populations: Application to milk production in dairy cattle. Proc. Nat. Acad. Sci. USA., 96: 9252-9257.
Direct Link - Kayang, B.B., A. Vignal, M. Inoue-Murayama, M. Miwa, J.L. Monvoisin, S. Ito and F. Minvielle, 2004. A first-generation microsatellite linkage map of the Japanese quail. Anim. Genet., 35: 195-200.
CrossRefPubMedDirect Link - Sacharczuk, M., R. Parada and K. Jaszczak, 2005. DNA fingerprinting of chicken lines divergently selected for high or low incidence of skeletal malformations. Anim. Sci. Papers Rep., 23: 119-127.
Direct Link - Saez, R., Y. Sanz and F. Toldra, 2004. PCR-based fingerprinting techniques for rapid detection of animal species in meat products. Meat Sci., 66: 659-665.
CrossRef - Salem, H.H., B.A. Ali, T.H. Huang and D.N. Qin, 2005. Use of Randomly Amplified Polymorphic DNA (RAPD) markers in poultry research. Int. J. Poult. Sci., 4: 804-811.
CrossRefDirect Link - Schmid, M., I. Nanda, H. Hoehn, M. Schartl and T. Haaf et al., 2005. Second report on chicken genes and chromosomes 2005. Cytogenet. Genome Res., 109: 415-479.
Direct Link - Semenova, S.K., A.L. Filenco, V.A. Vasil'ev, M.I. Prosniak, A.A. Sevast'ianova and A.P. Ryskov, 1996. Use of polymorphic DNA markers for differentiation of chicken breeds of varying origin. Genetika, 32: 795-803.
PubMedDirect Link - Sharma, A.K., J.D. Joshi, R.K. Singh, S. Kumar and D. Sharma, 2000. DNA Fingerprinting using synthetic oligonucleotide probe in native and exotic chicken breeds. Indian J. Poult. Sci., 35: 24-27.
Direct Link - Sharma, D., R.K.B. Appa, R.V. Singh and S.M. Totey, 2001. Genetic diversity among chicken breeds estimated through randomly amplified polymorphic DNA. Anim. Biotechnol., 12: 111-120.
CrossRefPubMedDirect Link - Sharma, D., K.B.C. Appa Rao, H.P. Singh and S.M. Totey, 1998. Randomly amplified polymorphic DNA (RAPD) for evaluating genetic relationships among varieties of guinea fowl. Genet. Analysis: Bimol. Eng., 14: 125-128.
PubMed - Siegel, P.B., A. Haberfeld, T.K. Mukherjee, L.C. Stallard, H.L. Marks, N.B. Anthony and E.A. Dunnington, 1992. Jungle fowl-domestic fowl relationships: A use of DNA fingerprinting. World's Poult. Sci. J., 48: 147-155.
CrossRefDirect Link - Singh, R.V. and D. Sharma, 2002. Within- and between-strain genetic variability in White Leghorn population detected through RAPD markers. Br. Poult. Sci., 43: 33-37.
CrossRefPubMedDirect Link - Smith, E.J., C.P. Jones, J. Bartlett and K.E. Nestor, 1996. Use of Randomly Amplified Polymorphic DNA markers for the genetic analysis of relatedness and diversity in chickens and turkeys. Poult. Sci., 75: 579-584.
PubMedDirect Link - Smith, E.J., T. Geng, E. Long, F.W. Pierson, D.P. Sponenberg, C. Larson and R. Gogal, 2005. Molecular analysis of the relatedness of five domesticated turkey strains. Biochem. Genet., 43: 35-47.
CrossRefPubMedDirect Link - Soller, M., S. Weigend, M.N. Romanov, J.C.M. Dekkers and S.J. Lamont, 2006. Strategies to assess structural variation in the chicken genome and its associations with biodiversity and biological performance. Poult. Sci., 85: 2061-2078.
CrossRefDirect Link - Takezaki, N. and M. Nei, 1996. Genetic distance and reconstruction of phylogenetic trees from microsatellite DNA. Genetics, 144: 389-399.
Direct Link - Tixier-Boichard, M., N. Kritchmann, M. Morisson, A. Bordas and J. Hillel, 1996. Assessment of genomic variability through DNA fingerprinting within and between chicken lines divergently selected for residual food consumption. Anim. Genet., 27: 163-169.
CrossRef - Triggs, S.J., M.J. Williams, S.J. Marshall and G.K. Chambers, 1992. Genetic structure of blue duck (Hymenolaimus malacorhynchos) populations revealed by DNA fingerprinting. Auk, 109: 80-89.
Direct Link - Twito, T., S. Weigend, S. Blum, Z. Granevitze, M.W. Feldman, R. Perl-Treves, U. Lavi and J. Hillel, 2007. Biodiversity of 20 chicken breeds assessed by SNPs located in gene regions. Cytogenet. Genome Res., 117: 319-326.
PubMed - Welsh, J. and M. McClelland, 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res., 18: 7213-7218.
CrossRefPubMedDirect Link - Wimmers, K., S. Ponsuksili, T. Hardge, A. Valle-Zarate, P.K. Mathur and P. Horst, 2000. Genetic distinctness of African, Asian and South American local chickens. Anim. Genet., 31: 159-165.
CrossRefPubMedDirect Link - Xena de Enrech, N., 2000. A decade of the RAPD method: Possibilities and limitations for plant genetics relationship studies. Acta. Cient. Venez., 51: 197-206.
PubMed - Ye, X., J. Zhu, S.G. Velleman and K.E. Nestor, 1998. Genetic diversity of commercial turkey primary breeding lines as estimated by DNA fingerprinting. Poult. Sci., 77: 802-807.
PubMed - Ye, X., J. Zhu, S.G. Velleman, W.L. Bacon and K.E. Nestor, 1998. Measurement of genetic variation within and between japanese quail lines using DNA fingerprinting. Poult. Sci., 77: 1755-1758.
PubMed - Ya-Bo, Y., W. Jin-Yu, D.M. Mekki, T. Qing-Ping and L. Hui-Fang et al., 2006. Evaluation of genetic diversity and genetic distance between twelve Chinese indigenous chicken breeds based on microsatellite markers. Int. J. Poult. Sci., 5: 550-556.
CrossRefDirect Link - Gao, Y.S., T. Yun-Jie, T. Hai-Bing, W. Ke-Hua and C. Kuan-Wei, 2006. AFLP fingerprinting analysis of genetic polymorphism of 12 indigenous chicken breeds. J. Agric. Biotechnol., 14: 498-502.
CrossRef - Zhang, X., F.C. Leung, D.K. Chan, G. Yang and C. Wu, 2002. Genetic diversity of Chinese native chicken breeds based on protein polymorphism, randomly amplified polymorphic DNA and microsatellite polymorphism. Poult. Sci., 81: 1463-1472.
CrossRefPubMedDirect Link