Trends in Applied Sciences Research1819-35792151-7908Science International10.3923/tasr.2019.178.185SyedMd Abu IftekharuddaulaKhandakar Md BiswasPartha Sarathi AkterNasira HossainMohammod 32019143Background and Objective: Arsenic phyto-toxicity tolerance of rice is largely controlled by rice genetics. The objective of present study was to evaluate the genetic variation and diversity of arsenic contaminated rice genotypes. Materials and Methods: A total of 295 SSR markers were used to study 15 arsenic contaminated rice genotypes. The molecular weights for each amplified allele were measured by using Alpha Ease. Summary statistics were determined by using Power Marker and the NTSYS-pc was used for cluster analysis. Results: Identified 191 polymorphic SSR markers detected 552 alleles among the tested genotypes of which 322 were common and the number of rare alleles was 230. Among the rare alleles, 141 were unique (genotype-specific) those could be used for varietal characterization. Polymorphism information content values ranged from 0.12-0.80, with an average of 0.37. Cluster analysis showed distinct two groups of tested genotypes. Cluster-I was constituted by the japonica subspecies US varieties ‘Jefferson’ and ‘Priscilla’ which were significantly different from all other genotypes. Cluster-II was comprised of indica subspecies, which were grouped into two different sub-clusters. Conclusion: It was concluded that high number of rare and unique alleles in the studied genotypes indicated their potentiality to use as a reservoir of rare genotypes.]]>Brammer, H. and P. Ravenscroft.200935647654Bhattacharjee, Y.,200731516591661Mukherjee, B., P. Das, T.R. Chaudhuri and T. Dasgupta,2013Oryza sativa L.) through RAPD markers.]]>51014Duxbury, J.M. and G. Panaullah,20072007Williams, P.N., A. Villada, C. Deacon, A. Raab and J. Figuerola et al.,20074168546859Awasthi, S., R. Chauhan, S. Srivastava and R.D. Tripathi,20172017Wang, M., Z. Tang, X.P. Chen, X. Wang and W.X. Zhou et al.,2019247736744Rahman, M.M., M.G. Rasaul, M.A. Hossain, K.M. Iftekharuddaula and H. Hasegawa,2012Oryza sativa L.) using SSR markers.]]>26244257Islam, S., M.M. Rahman, M.R. Islam and R. Naidu,201696139155Syu, C.H., C.C. Huang, P.Y. Jiang, C.H. Lee and D.Y. Lee,2015286179186Bakhat, H.F., Z. Zia, S. Fahad, S. Abbas and H.M. Hammad et al.,20172491429158Ma, L., L. Wang, Y. Jia and Z. Yang,20171834452Duxbury, J.M., A.B. Mayer, J.G. Lauren and N. Hassan,2003386169Zavala, Y.J. and J.M. Duxbury,20084238563860Norton, G.J., G. Duan, T. Dasgupta, M.R. Islam and M. Lei et al.,20094383818386Syed, M.A., K.M. Iftekharuddaula, M.K. Mian, M.G. Rasul and G.M. Rahmam et al.,2016Oryza sativa L.).]]>209805814Ashraf, H., A.M. Husaini, M.A. Bhat, G.A. Parray, S. Khan and N.A. Ganai,2016Oryza sativa L.) genotypes of the Western Himalayan region of India.]]>22547555Babu, B.K., V. Meena, V. Agarwal and P.K. Agrawal,2014Oryza sativa L.) accessions using SSR markers.]]>4143294339Kuramata, M., T. Abe, A. Kawasaki, K. Ebana, T. Shibaya, M. Yano and S. Ishikawa,20182018Hue, H.T., L.T. Nghia, H.T. Minh, L.H. Anh, L.T.T. Trang and T.D. Khanh,2018672434Pervaiz, Z.H., M.A. Rabbani, I. Khaliq, S.R. Pearce and S.A. Malik,20102010Alvarez, A., J.L. Fuentes, V. Puldon, P.J. Gomez and L. Mora et al.,2007Oryza sativa L.) varieties based on microsatellite markers.]]>3011091117Islam, M.R., L. Hassan, M.A. Salam, B.C.Y. Collard, R.K. Singh and G.B. Gregorio,201123137146Bazrkar-Khatibani, L., B.A. Fakheri, M. Hosseini-Chaleshtori, A. Mahender, N. Mahdinejad and J. Ali,2019Oryza sativa L.) by using Recombinant Inbred Line (RIL) population.]]>2019Liu, K. and S.V. Muse,20052121282129Anderson, J.A., G.A. Churchill, J.E. Autrique, S.D. Tanksley and M.E. Sorrells,199336181186Rohlf, F.J.,2002Version 2.2,Li, X., B. Hu, X. Pan, N. Zhang and D. Wu,2017Oryza sativa L.) based on the selected population with a modified model.]]>2017International Rice Genome Sequencing Project and T. Sasaki,2005436793800Joshi, R.K. and L. Behera,20076348354Pachauri, V., N. Taneja, P. Vikram, N.K. Singh and S. Singh,2013Oryza sativa L.).]]>7923932Prabakaran, A., K. Paramasivam, T. Rajesh and D. Rajarajan,20101512516Herrera, T.G., D.P. Duque, I.P. Almeida, G.T. Nunez, A.J. Pieters, C.P. Martinez and J.M. Tohme,20082008Matin, S., M. Ashrafuzzaman, M.M. Islam, S.U. Sikdar and N. Zobayer,201226472Wankhade, S.D., M.J. Cornejo and I. Mateu-Andres,201089951004Islam, M.Z., M. Khalequzzaman, M.K. Bashar, N.A. Ivy and M.A.K. Mian et al.,20182018Raychaudhuri, S.,20111475769