Abstract: Two herbicides clomazone and metazachlor were non-competitively inhibited the activities of chorismate mutase (CM, EC 5.4.99.5), prephenate dehydratase (PD, EC 5.2.1.51), acetohydroxyacid synthase (AHAS, 4.1.3.18) and phenylalanine ammonia-lyase (PAL, 4.3.1.5) in cotyledons of Lupinus termis. Inhibition was dependent on the type and concentration of each individual herbicide. L-tryptophan and its analog 5-methyltryptophan activated CM and PD while L-tyrosine, m-fluorotyrosine, p-fluorophenylalanine and L-phenylalanine inhibited both enzymes particularly in herbicide-treated seedlings. PAL was inhibited by phenylpropanoid intermediates involved in flavonol and anthocyanin biosynthetic pathway particularly p-coumaric acid, naringenin and quercetin. PAL inhibition by these intermediates was more pronounced in cotyledons of herbicide-treated seedlings. The levels of chlorophyll a, chlorophyll b, carotenoids, anthocyanin and nucleic acids were decreased by the two tested herbicides.