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Articles by V. Y Fofanov
Total Records ( 2 ) for V. Y Fofanov
  A Martinez Alcantara , E Ballesteros , C Feng , M Rojas , H Koshinsky , V. Y Fofanov , P Havlak and Y. Fofanov
 

Summary: PIQA is a quality analysis pipeline designed to examine genomic reads produced by Next Generation Sequencing technology (Illumina G1 Genome Analyzer). A short statistical summary, as well as tile-by-tile and cycle-by-cycle graphical representation of clusters density, quality scores and nucleotide frequencies allow easy identification of various technical problems including defective tiles, mistakes in sample/library preparations and abnormalities in the frequencies of appearance of sequenced genomic reads. PIQA is written in the R statistical programming language and is compatible with bustard, fastq and scarf Illumina G1 Genome Analyzer data formats.

 
 
 
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