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Year: 2009 | Volume: 25 | Issue: 12 | Page No.: 1554 - 1555
H Bao, H Guo, J Wang, R Zhou, X Lu and S. Shi
Abstract
Summary: We introduce a new visual analytics tool named MapView to facilitate the representation of large-scale short reads alignment data and genetic variation analysis. MapView can handle hundreds of millions of short reads on a desktop computer with limited memory. It supports a compact alignment view for both single-end and paired end short reads, multiple navigation and zoom modes and multi-thread processing. Moreover, MapView offers automated genetic variation detection. MapView has been used in our lab and by over 10 research labs worldwide.
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