This study presents a comparative analysis of fare collection systems for inter-city bus operation. One of the important issues in the bus scheduling model is stops of buses in the bus stations (called dwell time -where buses have to stop for boarding and alighting passengers in the bus station). This issue has a direct impact on increased travel time. Subsequently, increased travel time for one bus mission can cause delay in the loops of bus scheduling. This article describes a survey of fare collection systems for bus operations, covering two fare collection systems: paying cash and using the touch-n-go card. We studied this issue in a real case inter-city bus operation. It has been highlighted that a fare collection system using the touch-n-go card has higher efficiency than other the cash method in relation to reducing dwell time of buses in the bus station.